Dataset Open Access
This deposition contains the results from a simulation of reconstructions of undersampled atomic force microscopy (AFM) images. The reconstructions were obtained using weighted iterative thresholding compressed sensing algorithms.
The deposition consists of:
The HDF5 database is licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/) . Since the CC BY 4.0 license is not well suited for source code, the Python script is licensed under the BSD 2-Clause license (http://opensource.org/licenses/BSD-2-Clause) .
The files are provided as-is with no warranty as detailed in the above mentioned licenses.
The database is split into four parts:
These four parts must be concatenated before the database can be extracted from the tar.xz archive. On Unix-like systems this may be done using:
cat weighted_it_reconstructions.hdf5.tar.xz.part-* > weighted_it_reconstructions.hdf5.tar.xz
after which the archive may be extracted, e.g., using:
tar xfJ weighted_it_reconstructions.hdf5.tar.xz
WARNING: The extracted HDF5 database has a size of 70 GiB.
The simulation results in the database are based on "Atomic Force Microscopy Images of Cell Specimens" by Christian Rankl licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). The original images are available at http://dx.doi.org/10.5281/zenodo.17573. The original images are provided as-is without warranty of any kind. Both the original images as well as adapted images are part of the dataset.