Dataset Open Access

Structure Assisted Compressed Sensing Reconstruction of Undersampled AFM Images Dataset

Oxvig, Christian Schou; Arildsen, Thomas; Larsen, Torben


DCAT Export

<?xml version='1.0' encoding='utf-8'?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:adms="http://www.w3.org/ns/adms#" xmlns:cnt="http://www.w3.org/2011/content#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/" xmlns:dctype="http://purl.org/dc/dcmitype/" xmlns:dcat="http://www.w3.org/ns/dcat#" xmlns:duv="http://www.w3.org/ns/duv#" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:frapo="http://purl.org/cerif/frapo/" xmlns:geo="http://www.w3.org/2003/01/geo/wgs84_pos#" xmlns:gsp="http://www.opengis.net/ont/geosparql#" xmlns:locn="http://www.w3.org/ns/locn#" xmlns:org="http://www.w3.org/ns/org#" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:prov="http://www.w3.org/ns/prov#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:schema="http://schema.org/" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:vcard="http://www.w3.org/2006/vcard/ns#" xmlns:wdrs="http://www.w3.org/2007/05/powder-s#">
  <rdf:Description rdf:about="https://doi.org/10.5281/zenodo.18401">
    <rdf:type rdf:resource="http://www.w3.org/ns/dcat#Dataset"/>
    <dct:type rdf:resource="http://purl.org/dc/dcmitype/Dataset"/>
    <dct:identifier rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://doi.org/10.5281/zenodo.18401</dct:identifier>
    <foaf:page rdf:resource="https://doi.org/10.5281/zenodo.18401"/>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Oxvig, Christian Schou</foaf:name>
        <foaf:givenName>Christian Schou</foaf:givenName>
        <foaf:familyName>Oxvig</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Electronic Systems, Aalborg University</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description rdf:about="http://orcid.org/0000-0003-3254-3790">
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Arildsen, Thomas</foaf:name>
        <foaf:givenName>Thomas</foaf:givenName>
        <foaf:familyName>Arildsen</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Electronic Systems, Aalborg University</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:creator>
      <rdf:Description>
        <rdf:type rdf:resource="http://xmlns.com/foaf/0.1/Agent"/>
        <foaf:name>Larsen, Torben</foaf:name>
        <foaf:givenName>Torben</foaf:givenName>
        <foaf:familyName>Larsen</foaf:familyName>
        <org:memberOf>
          <foaf:Organization>
            <foaf:name>Department of Electronic Systems, Aalborg University</foaf:name>
          </foaf:Organization>
        </org:memberOf>
      </rdf:Description>
    </dct:creator>
    <dct:title>Structure Assisted Compressed Sensing Reconstruction of Undersampled AFM Images Dataset</dct:title>
    <dct:publisher>
      <foaf:Agent>
        <foaf:name>Zenodo</foaf:name>
      </foaf:Agent>
    </dct:publisher>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#gYear">2015</dct:issued>
    <dcat:keyword>Atomic Force Microscopy</dcat:keyword>
    <dcat:keyword>Compressed Sensing</dcat:keyword>
    <dcat:keyword>Undersampling</dcat:keyword>
    <dcat:keyword>Image Reconstruction</dcat:keyword>
    <dcat:keyword>Reproducible Research</dcat:keyword>
    <dct:issued rdf:datatype="http://www.w3.org/2001/XMLSchema#date">2015-06-10</dct:issued>
    <owl:sameAs rdf:resource="https://sandbox.zenodo.org/record/18401"/>
    <adms:identifier>
      <adms:Identifier>
        <skos:notation rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://sandbox.zenodo.org/record/18401</skos:notation>
      </adms:Identifier>
    </adms:identifier>
    <dct:relation rdf:resource="https://doi.org/10.5281/zenodo.17573"/>
    <dct:hasVersion rdf:resource="https://doi.org/10.5281/zenodo.60512"/>
    <dct:isPartOf rdf:resource="https://sandbox.zenodo.org/communities/zenodo"/>
    <dct:description>&lt;p&gt;This deposition contains&amp;nbsp;the results from a simulation of reconstructions of undersampled atomic force microscopy (AFM) images. The reconstructions were obtained using weighted iterative thresholding compressed sensing algorithms.&lt;/p&gt; &lt;p&gt;The&amp;nbsp;deposition&amp;nbsp;consists of:&lt;/p&gt; &lt;ol&gt; &lt;li&gt;An &amp;nbsp;HDF5&amp;nbsp;database containing the results from&amp;nbsp;simulations of reconstructions of undersampled atomic force microscopy images (&lt;em&gt;weighted_it_reconstructions.hdf5&lt;/em&gt;).&lt;/li&gt; &lt;li&gt;The Python script which was used to create the database (&lt;em&gt;weighted_it_reconstructions.py&lt;/em&gt;).&lt;/li&gt; &lt;li&gt;MD5 and SHA256 checksums of the database and Python script files (&lt;em&gt;weighted_it_reconstructions.MD5SUMS /&amp;nbsp;weighted_it_reconstructions.SHA256SUMS&lt;/em&gt;).&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;The HDF5 database is licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/) . Since the CC BY 4.0 license is not well suited for source code,&amp;nbsp;the Python script is licensed under the BSD 2-Clause license (http://opensource.org/licenses/BSD-2-Clause) .&lt;/p&gt; &lt;p&gt;&lt;strong&gt;The files are provided as-is with no warranty as detailed in the above mentioned licenses.&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;The database is split into four parts:&lt;/p&gt; &lt;ol&gt; &lt;li&gt;weighted_it_reconstructions.hdf5.tar.xz.part-00&lt;/li&gt; &lt;li&gt;weighted_it_reconstructions.hdf5.tar.xz.part-01&lt;/li&gt; &lt;li&gt;weighted_it_reconstructions.hdf5.tar.xz.part-02&lt;/li&gt; &lt;li&gt;weighted_it_reconstructions.hdf5.tar.xz.part-03&lt;/li&gt; &lt;/ol&gt; &lt;p&gt;These four parts must be concatenated before the database&amp;nbsp;can be extracted from the&amp;nbsp;tar.xz archive. On Unix-like systems this may be done using:&lt;/p&gt; &lt;p&gt;&lt;em&gt;cat weighted_it_reconstructions.hdf5.tar.xz.part-* &amp;gt;&amp;nbsp;weighted_it_reconstructions.hdf5.tar.xz&lt;/em&gt;&lt;/p&gt; &lt;p&gt;after which&amp;nbsp;the archive may be extracted, e.g.,&amp;nbsp;using:&lt;/p&gt; &lt;p&gt;&lt;em&gt;tar&amp;nbsp;xfJ&amp;nbsp;weighted_it_reconstructions.hdf5.tar.xz&lt;/em&gt;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;WARNING: The extracted HDF5 database has a size of 70 GiB.&lt;/strong&gt;&lt;/p&gt; &lt;p&gt;The simulation results in the database are based on&amp;nbsp;&amp;quot;Atomic Force Microscopy Images of Cell Specimens&amp;quot; by Christian Rankl licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). The original images are available at http://dx.doi.org/10.5281/zenodo.17573. The&amp;nbsp;original images are provided as-is without warranty of any kind. Both&amp;nbsp;the original images as well as adapted images are part of the dataset.&amp;nbsp;&lt;/p&gt;</dct:description>
    <dct:accessRights rdf:resource="http://publications.europa.eu/resource/authority/access-right/PUBLIC"/>
    <dct:accessRights>
      <dct:RightsStatement rdf:about="info:eu-repo/semantics/openAccess">
        <rdfs:label>Open Access</rdfs:label>
      </dct:RightsStatement>
    </dct:accessRights>
    <dcat:distribution>
      <dcat:Distribution>
        <dct:license rdf:resource="http://creativecommons.org/licenses/by/4.0/legalcode"/>
        <dcat:accessURL rdf:resource="https://doi.org/10.5281/zenodo.18401"/>
      </dcat:Distribution>
    </dcat:distribution>
  </rdf:Description>
</rdf:RDF>
0
0
views
downloads
All versions This version
Views 0114
Downloads 027
Data volume 0 Bytes28.0 GB
Unique views 097
Unique downloads 012

Share

Cite as