Dataset Open Access
Oxvig, Christian Schou;
Arildsen, Thomas;
Larsen, Torben
<?xml version='1.0' encoding='utf-8'?> <oai_dc:dc xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd"> <dc:creator>Oxvig, Christian Schou</dc:creator> <dc:creator>Arildsen, Thomas</dc:creator> <dc:creator>Larsen, Torben</dc:creator> <dc:date>2015-06-10</dc:date> <dc:description>This deposition contains the results from a simulation of reconstructions of undersampled atomic force microscopy (AFM) images. The reconstructions were obtained using weighted iterative thresholding compressed sensing algorithms. The deposition consists of: An HDF5 database containing the results from simulations of reconstructions of undersampled atomic force microscopy images (weighted_it_reconstructions.hdf5). The Python script which was used to create the database (weighted_it_reconstructions.py). MD5 and SHA256 checksums of the database and Python script files (weighted_it_reconstructions.MD5SUMS / weighted_it_reconstructions.SHA256SUMS). The HDF5 database is licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/) . Since the CC BY 4.0 license is not well suited for source code, the Python script is licensed under the BSD 2-Clause license (http://opensource.org/licenses/BSD-2-Clause) . The files are provided as-is with no warranty as detailed in the above mentioned licenses. The database is split into four parts: weighted_it_reconstructions.hdf5.tar.xz.part-00 weighted_it_reconstructions.hdf5.tar.xz.part-01 weighted_it_reconstructions.hdf5.tar.xz.part-02 weighted_it_reconstructions.hdf5.tar.xz.part-03 These four parts must be concatenated before the database can be extracted from the tar.xz archive. On Unix-like systems this may be done using: cat weighted_it_reconstructions.hdf5.tar.xz.part-* > weighted_it_reconstructions.hdf5.tar.xz after which the archive may be extracted, e.g., using: tar xfJ weighted_it_reconstructions.hdf5.tar.xz WARNING: The extracted HDF5 database has a size of 70 GiB. The simulation results in the database are based on "Atomic Force Microscopy Images of Cell Specimens" by Christian Rankl licensed under CC BY 4.0 (http://creativecommons.org/licenses/by/4.0/). The original images are available at http://dx.doi.org/10.5281/zenodo.17573. The original images are provided as-is without warranty of any kind. Both the original images as well as adapted images are part of the dataset. </dc:description> <dc:identifier>https://zenodo.org/record/18401</dc:identifier> <dc:identifier>10.5281/zenodo.18401</dc:identifier> <dc:identifier>oai:zenodo.org:18401</dc:identifier> <dc:relation>doi:10.5281/zenodo.17573</dc:relation> <dc:relation>doi:10.5281/zenodo.60512</dc:relation> <dc:relation>url:https://sandbox.zenodo.org/communities/zenodo</dc:relation> <dc:rights>info:eu-repo/semantics/openAccess</dc:rights> <dc:rights>http://creativecommons.org/licenses/by/4.0/legalcode</dc:rights> <dc:subject>Atomic Force Microscopy</dc:subject> <dc:subject>Compressed Sensing</dc:subject> <dc:subject>Undersampling</dc:subject> <dc:subject>Image Reconstruction</dc:subject> <dc:subject>Reproducible Research</dc:subject> <dc:title>Structure Assisted Compressed Sensing Reconstruction of Undersampled AFM Images Dataset</dc:title> <dc:type>info:eu-repo/semantics/other</dc:type> <dc:type>dataset</dc:type> </oai_dc:dc>
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