Published 2026 | Version 2

CarD-T: LLM Automated Literature Review for the Nomination

  • 1. Bioengineering UCSD-SDSU JDP Computational Active Matter Mechanics Lab
  • 2. ROR icon San Diego State University
  • 3. Department of Bioengineering, University of California San Diego

Description

Carcinogenic Determination via Transformers (or CarD-T) is an automated pipeline that combines transformer-based machine learning with probabilistic analysis to identify potential carcinogens from biomedical literature. The framework processes accumulating scientific publications (left), applies a trained Named Entity Recognition (NER) model to extract potential carcinogenic entities (center), and Probabilistic Carcinogen Denomination (or PCarD) to analyze temporal trends in evidence shifts (right). This approach enables classification of candidates through Bayesian temporal analysis, overcoming limitations of traditional manual literature review methods. CarD-T is an LLM framework to automate literature review of carcinogen curation with probabilistic analysis of likely carcinogenicity.

Abstract

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AACR_CarDT_2025.pdf

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Additional details

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Funding

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Dates

Submitted
2026-08-25
Submitted to Zenodo through Posters.science
Other
2024-08-20
Poster presentation date